PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016492825.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 434aa    MW: 49634.2 Da    PI: 6.124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016492825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035150173123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg+ ++++ +Lk+H +  H
  XP_016492825.1 150 YICSVCGRKCKTNLDLKKHFKQlH 173
                     89*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.0E-770140IPR029060PIN domain-like
PROSITE profilePS5015710.907150178IPR007087Zinc finger, C2H2
SMARTSM003550.0051150173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
CDDcd061673.13E-12164304No hitNo description
Gene3DG3DSA:3.40.50.10105.0E-7235305IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHINS CAAGQEIDME  60
RTKEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMCLKKVA QSFGEVVDMS AYANRHAFIH  120
LPQWVVEQRR ERRHLDVLER KGAVTPSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK  180
LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP  240
QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLRRAKE ANLGTVVVGD MDRALGRHAD  300
LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FDGGISGEGT SVGTLMDDIV  360
EKLELSSMRI SAFSEGEEDE DEDVEELDEE DWLRARLDQP GDDKYDTEDS LLDSEDEEGD  420
YLLDSDDEDP GQMV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492825.10.0PREDICTED: uncharacterized protein LOC107812283
TrEMBLA0A0V0HYN40.0A0A0V0HYN4_SOLCH; Putative C2H2-like zinc finger protein-like (Fragment)
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-164C2H2-like zinc finger protein